Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M4 Ribosome_UniqueNum	BreastC_M4 Ribosome_pVal	BreastC_M4 Ribosome_Unique	ColonC_M2 Chr17q11-12,21-25_UniqueNum	ColonC_M2 Chr17q11-12,21-25_pVal	ColonC_M2 Chr17q11-12,21-25_Unique
CAIRO_HEPATOBLASTOMA_CLASSES_UP	0		1.57060863124e-12	24	2.78293024259e-14	C6ORF48|CCNB1IP1|EEF1B2|EIF3F|EIF3L|EIF4B|FBL|IMPDH2|RPL6|RPL10A|RPL11|RPL14|RPL15|RPL18|RPL18A|RPL22|RPL24|RPL28|RPS3|RPS6|RPS9|RPS14P3|RPS16|RSL1D1	38	3.11338796006e-12	AARSD1|AATF|ACLY|AP2B1|BIRC5|BLMH|CCDC47|CDC6|CDC27|CIAO1|COIL|DNAJC7|EIF4A3|GPS1|KPNB1|LIG3|LRRC59|MRPL12|MRPS7|NLE1|NME1|NOL11|NUP85|PHB|RPL23|RPS6KB1|SEPT9|SPAG5|SRSF1|SUPT4H1|TEX2|TMEM97|TOP2A|TUBG1|UTP6|UTP18|ZNF207|ZNHIT3
Human Viral_Cairo08_982genes (19061838-TableS7)	0		8.12569035996e-09	24	1.52475951223e-11	C6ORF48|CCNB1IP1|EIF3F|EIF3L|EIF4B|FBL|IMPDH2|RPL6|RPL10A|RPL11|RPL14|RPL15|RPL18|RPL18A|RPL22|RPL24|RPL28|RPLP0|RPS3|RPS6|RPS9|RPS14|RPS16|RSL1D1	38	1.62361331248e-08	AARSD1|AATF|ACLY|AP2B1|BIRC5|BLMH|CCDC47|CDC6|CDC27|CIAO1|COIL|DNAJC7|EIF4A3|GPS1|KPNB1|LIG3|LRRC59|MRPS7|NLE1|NME1-NME2|NOL11|NUP85|PHB|RPL23|RPS6KB1|SEPT9|SLC25A10|SPAG5|SRSF1|SUPT4H1|TEX2|TMEM97|TOP2A|TUBG1|UTP6|UTP18|ZNF207|ZNHIT3
MARTENS_TRETINOIN_RESPONSE_DN	0		3.07656898259e-07	37	1.55165497041e-25	EEF1B2|EIF3G|IMPDH2|MYC|RPL9|RPL10A|RPL11|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL24|RPL26|RPL27|RPL29|RPL31|RPL34|RPL35|RPL37|RPLP0|RPS3|RPS5|RPS6|RPS9|RPS10|RPS12|RPS14|RPS16|RPS19|RPS25|RPS27|RPS27A|RPSA|RSL1D1|SNHG4|SNORD21	33	6.15313796517e-07	BIRC5|COASY|CSNK1D|DCXR|ERAL1|HNRNPDL|HSD17B8|IFT20|KRT10|LINC02210|METTL23|MIF4GD|MLX|MRM1|MRPL12|MRPS7|NF1|NLE1|NME1-NME2|NT5C|OXLD1|PEX12|PIGW|PSME3|RPL23|SRSF1|SRSF7|STRADA|SUPT4H1|SYNGR2|TEFM|TLCD1|TMUB2
Mouse Lymphoma_Wu08_1114genes (18535662-TableS1b)	0		3.07277636828e-06	14	7.0799153377e-07	CDC26|EEF1G|EIF3F|EIF3G|EIF3K|FBL|IMPDH2|RPL6|RPL10A|RPL11|RPL22|RPL35A|RPS25|TOMM7	24	5.4375612028e-06	AARSD1|AFMID|ANKRD40|APPBP2|BIRC5|BLMH|CENPX|COA3|EFTUD2|EIF4A3|FASN|GOSR1|HNRNPDL|JUP|KAT2A|MRPL12|MRPL45|NME1|PCYT2|POLDIP2|PSME3|TNFAIP1|TOP2A|USP36
Ribosomal protein	0		0.000214127893267	46	1.39036843174e-69	FAU|RPL6|RPL9|RPL10A|RPL10L|RPL11|RPL12|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL22|RPL24|RPL26|RPL27|RPL28|RPL29|RPL31|RPL34|RPL35|RPL35A|RPL37|RPL39|RPLP0|RPLP1|RPS3|RPS5|RPS6|RPS7|RPS9|RPS10|RPS12|RPS13|RPS14|RPS15A|RPS16|RPS17|RPS19|RPS25|RPS27|RPS27A|RPS28|RPS29|RPSA|UBA52	9	0.000428255786535	MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|RPL23
cellular amide metabolic process [GoID:GO:0043603; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	0		0.000450882061755	58	2.67581074345e-47	EEF1B2|EEF1G|EEF2|EIF3D|EIF3F|EIF3G|EIF3K|EIF3L|EIF4B|GSTO2|RPL6|RPL9|RPL10A|RPL10L|RPL11|RPL12|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL22|RPL24|RPL26|RPL27|RPL28|RPL29|RPL31|RPL34|RPL35|RPL35A|RPL36A-HNRNPH2|RPL37|RPL39|RPLP0|RPLP1|RPS3|RPS5|RPS6|RPS7|RPS9|RPS10|RPS12|RPS13|RPS14|RPS15A|RPS16|RPS17|RPS19|RPS25|RPS27|RPS27A|RPS28|RPS29|RPSA|SEC11A|TRHDE|UBA52	30	0.000901764123509	AARSD1|ACACA|BECN1|CASC3|COA3|DHFR2|EIF4A3|ERAL1|ERBB2|FASN|FSHB|MIF4GD|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|NPEPPS|NUP85|POLG2|RPL23|RPS6KB1|SLC46A1|STAT3|STAT5B|TACO1|UNK
cellular macromolecule catabolic process [GoID:GO:0044265; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	0		0.000237284064196	47	4.94783692767e-32	CDC26|EIF4B|RPL6|RPL9|RPL10A|RPL11|RPL12|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL22|RPL24|RPL26|RPL27|RPL28|RPL29|RPL31|RPL34|RPL35|RPL35A|RPL37|RPL39|RPLP0|RPLP1|RPS3|RPS5|RPS6|RPS7|RPS9|RPS10|RPS12|RPS13|RPS14|RPS15A|RPS16|RPS17|RPS19|RPS25|RPS27|RPS27A|RPS28|RPS29|RPSA|UBA52|UBXN1	32	0.000474568128393	ANAPC11|AP2B1|CASC3|CCDC47|CDC27|CSNK1D|DHX34|EIF4A3|KCTD2|KPNB1|MVB12B|NPLOC4|NT5C3B|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RMND5B|RPL23|SDF2|SMG8|SNF8|SPOP|SUMO2|TLK2|TNFAIP1|TOM1L1|UBE2Z|USP36|VPS25
intracellular ribonucleoprotein complex [GoID:GO:0030529; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		7.6482878799e-06	50	1.55370870899e-41	EEF2|EIF4B|FBL|RPL6|RPL9|RPL10A|RPL10L|RPL11|RPL12|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL22|RPL24|RPL26|RPL27|RPL28|RPL29|RPL31|RPL34|RPL35|RPL35A|RPL36A-HNRNPH2|RPL37|RPL39|RPLP0|RPLP1|RPS3|RPS5|RPS6|RPS7|RPS9|RPS10|RPS12|RPS13|RPS14|RPS15A|RPS16|RPS17|RPS19|RPS25|RPS27|RPS27A|RPS28|RPS29|RPSA|RSL1D1|UBA52	30	1.52965757598e-05	BRCA1|CASC3|DHX8|DHX40|EFTUD2|EIF4A3|FTSJ3|JMJD6|MCRIP1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|NLE1|NSRP1|NUFIP2|RPL23|RPTOR|SRP68|SRSF1|TEFM|TOP2A|UNK|UTP6|UTP18|ZMAT5
large ribosomal subunit [GoID:GO:0015934; evidenceTypes:IBA|IDA|IEA|ISS|NAS|TAS]	0		0.000469756642126	27	2.11918590028e-38	RPL6|RPL9|RPL10A|RPL10L|RPL11|RPL12|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL22|RPL24|RPL26|RPL27|RPL28|RPL29|RPL31|RPL34|RPL35|RPL35A|RPL36A-HNRNPH2|RPL37|RPL39|RPLP0|RPLP1|UBA52	7	0.000939513284252	MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|RPL23
mRNA metabolic process [GoID:GO:0016071; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0		0.000112813231654	45	5.62969551436e-35	EIF4B|RPL6|RPL9|RPL10A|RPL11|RPL12|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL22|RPL24|RPL26|RPL27|RPL28|RPL29|RPL31|RPL34|RPL35|RPL35A|RPL37|RPL39|RPLP0|RPLP1|RPS3|RPS5|RPS6|RPS7|RPS9|RPS10|RPS12|RPS13|RPS14|RPS15A|RPS16|RPS17|RPS19|RPS25|RPS27|RPS27A|RPS28|RPS29|RPSA|UBA52	27	0.000225626463307	CASC3|CDK11B|DHX8|DHX34|DHX40|EFTUD2|EIF4A3|JMJD6|MED1|NSRP1|NT5C3B|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RBM11|RPL23|SMG8|SRSF1|SRSF7|STAT3|SUPT4H1|SUPT6H|TSEN54|ZMAT5
negative regulation of protein modification by small protein conjugation or removal [GoID:GO:1903321; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|TAS]	0		0.000342155515585	7	1.61541705933e-05	CDC26|RPL11|RPS3|RPS7|RPS27A|UBA52|UBXN1	9	0.000668156860577	ANAPC11|CDC27|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RPL23
negative regulation of protein ubiquitination [GoID:GO:0031397; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|TAS]	0		0.000219613963125	7	1.09721397159e-05	CDC26|RPL11|RPS3|RPS7|RPS27A|UBA52|UBXN1	9	0.000428255786535	ANAPC11|CDC27|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RPL23
negative regulation of ubiquitin protein ligase activity [GoID:GO:1904667; evidenceTypes:IBA|IDA|IMP|TAS]	0		3.38734162914e-05	5	6.47924814993e-05	CDC26|RPL11|RPS7|RPS27A|UBA52	9	2.95435108357e-06	ANAPC11|CDC27|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RPL23
negative regulation of ubiquitin-protein transferase activity [GoID:GO:0051444; evidenceTypes:IBA|IDA|IEA|IMP|ISS|TAS]	0		5.35973310085e-05	5	0.000100437447372	CDC26|RPL11|RPS7|RPS27A|UBA52	9	6.75721464496e-06	ANAPC11|CDC27|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RPL23
nucleolus [GoID:GO:0005730; evidenceTypes:IBA|IDA|IEA|IMP|ISS|NAS|TAS]	0		0.00010017433705	19	5.34251155463e-07	EIF3L|FBL|MYC|RPL11|RPL18|RPL26|RPL35|RPS3|RPS6|RPS7|RPS9|RPS10|RPS13|RPS14|RPS19|RPS25|RPS27A|RSL1D1|VPS51	31	0.000199814422945	AATF|ACACA|ANAPC11|BCAS3|CCDC137|COIL|DDX52|EIF4A3|FTSJ3|GRB2|JMJD6|JPT1|MED1|MIF4GD|NARF|NF1|NLE1|NOL11|RDM1|RPL23|SIRT7|SRP68|SUZ12|THAP2|TNFAIP1|TOP2A|TSEN54|USP36|UTP6|UTP18|ZNF207
organelle assembly [GoID:GO:0070925; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0		0.000487615411417	14	5.70204598691e-05	RPL6|RPL10L|RPL11|RPL12|RPL24|RPS3|RPS5|RPS10|RPS14|RPS17|RPS19|RPS27|RPS28|RPSA	25	0.000918210362964	BECN1|BIRC5|BRCA1|CENPX|CSNK1D|DYNLL2|ERAL1|HGS|IFT20|KPNB1|MKS1|MRPS7|NLE1|NOTCH1|PIP4K2B|PRKAR1A|SEPT9|SNF8|SPACA1|SPAG5|TRIM37|TUBG1|VPS25|WDR45B|ZNF207
regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GoID:GO:2000058; evidenceTypes:IDA|IEA|IMP|ISS|NAS|TAS]	0		0.000152022718058	5	0.00026136072507	CDC26|RPL11|RPS7|RPS27A|UBA52	9	4.26847110455e-05	ANAPC11|CDC27|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RPL23
regulation of ubiquitin protein ligase activity [GoID:GO:1904666; evidenceTypes:IBA|IDA|IEA|IMP|TAS]	0		7.71824955481e-05	5	0.000141571184646	CDC26|RPL11|RPS7|RPS27A|UBA52	9	1.27938064503e-05	ANAPC11|CDC27|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RPL23
regulation of ubiquitin-protein transferase activity [GoID:GO:0051438; evidenceTypes:IBA|IDA|IEA|IGI|IMP|IPI|ISS|TAS]	0		0.000362395628545	5	0.000568694923765	CDC26|RPL11|RPS7|RPS27A|UBA52	9	0.000156096333325	ANAPC11|CDC27|PSMB3|PSMC5|PSMD3|PSMD11|PSMD12|PSME3|RPL23
ribonucleoprotein complex [GoID:GO:1990904; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		8.27063627885e-06	50	1.89421808755e-41	EEF2|EIF4B|FBL|RPL6|RPL9|RPL10A|RPL10L|RPL11|RPL12|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL22|RPL24|RPL26|RPL27|RPL28|RPL29|RPL31|RPL34|RPL35|RPL35A|RPL36A-HNRNPH2|RPL37|RPL39|RPLP0|RPLP1|RPS3|RPS5|RPS6|RPS7|RPS9|RPS10|RPS12|RPS13|RPS14|RPS15A|RPS16|RPS17|RPS19|RPS25|RPS27|RPS27A|RPS28|RPS29|RPSA|RSL1D1|UBA52	30	1.65412725577e-05	BRCA1|CASC3|DHX8|DHX40|EFTUD2|EIF4A3|FTSJ3|JMJD6|MCRIP1|MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|NLE1|NSRP1|NUFIP2|RPL23|RPTOR|SRP68|SRSF1|TEFM|TOP2A|UNK|UTP6|UTP18|ZMAT5
ribosome [GoID:GO:0005840; evidenceTypes:IBA|IDA|IEA|ISS|NAS|TAS]	0		4.42558921685e-05	47	8.3399264279e-65	EEF2|RPL6|RPL9|RPL10A|RPL10L|RPL11|RPL12|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL22|RPL24|RPL26|RPL27|RPL28|RPL29|RPL31|RPL34|RPL35|RPL35A|RPL36A-HNRNPH2|RPL37|RPL39|RPLP0|RPLP1|RPS3|RPS5|RPS6|RPS7|RPS9|RPS10|RPS12|RPS13|RPS14|RPS15A|RPS16|RPS17|RPS19|RPS25|RPS27|RPS27A|RPS28|RPS29|RPSA|UBA52	12	8.85117843369e-05	MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58|MRPS7|MRPS23|NLE1|NUFIP2|RPL23|SRP68
ribosome biogenesis [GoID:GO:0042254; evidenceTypes:EXP|IBA|IC|IDA|IEA|IMP|ISS|NAS|TAS]	0		0.000201802267134	47	1.51434448373e-56	FBL|RPL6|RPL9|RPL10A|RPL10L|RPL11|RPL12|RPL14|RPL15|RPL18|RPL18A|RPL21|RPL22|RPL24|RPL26|RPL27|RPL28|RPL29|RPL31|RPL34|RPL35|RPL35A|RPL37|RPL39|RPLP0|RPLP1|RPS3|RPS5|RPS6|RPS7|RPS9|RPS10|RPS12|RPS13|RPS14|RPS15A|RPS16|RPS17|RPS19|RPS25|RPS27|RPS27A|RPS28|RPS29|RPSA|RSL1D1|UBA52	14	0.000403604534269	AATF|CSNK1D|DDX52|EIF4A3|ERAL1|FTSJ3|MRM1|MRPL10|MRPS7|NLE1|NOL11|RPL23|UTP6|UTP18
